Working with Results Files

NeuroExplorer can save both graphical and numerical results of the analysis in a NeuroExplorer results file. Since each result has both graphics and numerical values, the results are saved in a set of files with common file name and different extensions.

You can use SavedResults | Quick Save Results menu command to save all the current results:


For example, if you run Perievent Rasters analysis on data file TestD21.plx and select Quick Save Results, the results will be saved in the following 5 files:

  • TestD21_plx Perievent Rasters.nexresult (text file with links to other files of this result)
  • TestD21_plx Perievent Rasters numres.txt (text file with numerical results)
  • TestD21_plx Perievent Rasters numres summary.txt (text file with the summary of numerical results)
  • TestD21_plx Perievent Rasters.png (.png file with graphical analysis results)
  • TestD21_plx Perievent Rasters.ntp (template file with analysis parameters)

By default, these files be saved in the folder:
C:\Users\<your_user_name>\Documents\NeuroExplorer 5\Results.

The .nexresult file is the file containing description of the analysis and the links to other result files. You can open this file in NeuroExplorer using SavedResults | Open Saved Results File menu

When you open results file, NeuroExplorer loads graphics and numerical results files and shows a window with 4 tabs:


This window looks similar to the Graphical results window, but the results are not ‘live’ — you cannot adjust analysis parameters and recalculate the results.

However, you can replicate the results saved in the results file. Use SavedResults | Restore Analysis in NeuroExplorer menu command:


NeuroExplorer will do the following:

  • Open data file used in the calculation of results
  • Select variables for analysis exactly as they were selected in the saved results
  • Run the analysis used in the calculation of results (using the same analysis parameters)

You can also use SavedResults | Results Folder Summary menu command to view all the saved results in a grid:


In this Results Folder Summary view you can:

  • Sort results by any of the columns by clicking at the column header
  • Open results file by double-clicking the row representing the file
  • Convert selected results to PowerPoint slides using right-click and selecting Add Slides… context menu command
  • Select results using Find combo box in the NeuroExplorer toolbar. The text in all the columns will be used when filtering the results. For example, to view only results saved in 2015, type 2015 in Find box:




How to Customize Analyses Panel

There are two ways to select an analysis in NeuroExplorer – you can click at the analysis you want to run in the Analyses panel:


or select an analysis via Analysis | Select Analysis Type menu command:


The fastest way is to use Analyses panel. However, now that NeuroExplorer has more than 30 analyses to choose from, you may have to scroll the panel to get to many of the analyses. To speed up the access to the analyses you use most often, you can rearrange the order of the analyses in the All Analyses list by dragging the analyses up and down in the list:


There is also Recently Used Analyses list that shows the last 10 analyses that were used.

The layout of the Analyses panel is saved in the file

C:\Users\<user_name>\Documents\NeuroExplorer 5\Layouts\AnalysesPanelLayout.layout

If you want to standardize the order of analyses on all computers in your lab, you can rearrange the analyses on one of the computers, exit NeuroExplorer and copy AnalysesPanelLayout.layout file to C:\Users\<user_name>\Documents\NeuroExplorer 5\Layouts folders on other computers.

Waveform analysis in NeuroExplorer

NeuroExplorer version 5.005 released on November 15, 2014, introduces a new analysis – Waveform Comparison. This analysis was added at a request of one of the NeuroExplorer customers who needed to compare average waveforms from one interval to another. This is a standard requirement when one does optogenetical identification of neurons, i.e. spikes are triggered by light-induced activation. To make sure this manipulation does not dramatically change the waveform of the spike, one needs to compare shape of light-triggered spikes to spontaneously occurring spikes. When you run Waveform Comparison analysis, you can display average waveforms and waveform standard deviations (shown as a gray background around averages):



You can also display waveforms in Principal Component space:


To compare  light-triggered spikes to spontaneously occurring spikes, you need to specify two interval filters – one for stimulation periods and one for the periods with no stimulation. You can compare waveforms side-by-side:


In the graph above the left column shows waveforms that were recorded during stimulation, the right column shows waveform averages that were recorded in periods with no stimulation.

You can also overlay averages for each neuron:



as well as overlay PC projections:


and run MANOVA to evaluate differences in the waveform projections in principal component space:



Exporting Data to Text Files

NeuroExplorer version 5.002 was released on September 8, 2014. Here is a summary of what’s new in this version:

  • Coherence, Spectrograms and PeriEvent Spectrograms analyses now have all the spectral calculation options available in other spectral analyses (selection of 3 types of data preprocessing, 6 types of windowing functions and multi-taper options).
  • Burst Analysis now saves properties of each burst in Numerical Results:

Burst Properties

  • When exporting data or numerical results to text files, a user can select what character is used to separate items in a line (comma, space or tab; previously only tab was available). The new comma-separated output (.CSV file format) is especially convenient when working with Excel since this file format is natively supported by Excel.
  • When exporting data to text files, a user can now export waveform variables and marker variables (previously, NeuroExplorer could only export neurons, events, intervals and continuous variables).
  • You probably know that you can open a .nex file in NeuroExplorer by double-clicking at the file in File Explorer. For some reason, Windows sends several open file commands to NeuroExplorer when you double click at a .nex file. You could see some files opened twice, and some files generating a “sharing violation” error. This problem is fixed in NeuroExplorer 5.002 (and while we are talking about opening files, note that you can also open a .nex file by dragging the file into NeuroExplorer).